Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB48041.1KEGG: hor:Hore_18960 ABC transporter related; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (598 aa)    
Predicted Functional Partners:
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.854
ADB48031.1
PFAM: permease YjgP/YjgQ family protein; KEGG: gvi:gvip124 hypothetical protein.
 
  
 0.800
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.773
ADB48037.1
KpsF/GutQ family protein; KEGG: gsu:GSU1893 carbohydrate isomerase KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.766
ADB48035.1
PFAM: lipid A biosynthesis acyltransferase; KEGG: hor:Hore_18900 lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.757
ADB48036.1
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sat:SYN_00949 3-deoxy-manno-octulosonate-8- phosphatase.
 
   
 0.714
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
   
 0.711
kdsA
TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: gme:Gmet_1277 2-dehydro-3- deoxyphosphooctonate aldolase.
 
   
 0.708
ADB46744.1
KEGG: hmo:HM1_2276 spermidine/putrescine abc transporter, ATP-binding protein PotA; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 
   
0.704
ADB48032.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dfe:Dfer_4049 ABC transporter related.
 
   
0.665
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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