Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB48147.1KEGG: swo:Swol_2443 hypothetical protein. (261 aa)    
Predicted Functional Partners:
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.832
ADB48146.1
HtrA2 peptidase; KEGG: chy:CHY_0057 putative serine protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
  
  
 0.809
ADB48144.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ckr:CKR_1424 hypothetical protein.
       0.600
ADB48148.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
    0.515
ADB48143.1
PFAM: conserved hypothetical protein; KEGG: tex:Teth514_2248 hypothetical protein.
       0.477
ADB47878.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bad:BAD_0967 hypothetical protein.
   
    0.449
ADB48142.1
PFAM: metallophosphoesterase; KEGG: cdf:CD0346 putative phosphoesterase.
       0.426
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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