Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADB48181.1Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (294 aa)    
Predicted Functional Partners:
ADB48179.1
KEGG: geo:Geob_3477 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
 
 0.980
ADB48182.1
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: sth:STH372 rod shape-determining protein MreB.
 
 
 0.979
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.957
ADB48180.1
TIGRFAM: rod shape-determining protein MreD; KEGG: dae:Dtox_3337 rod shape-determining protein MreD.
  
 
 0.951
ADB48183.1
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; helix-hairpin-helix motif; KEGG: gtn:GTNG_2548 DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.930
ADB48061.1
PFAM: cell shape determining protein MreB/Mrl; KEGG: hmo:HM1_1114 cell shape determining protein, MreB/mrl family, putative.
 
 
 0.925
ADB48184.1
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.875
ADB48176.1
PFAM: Protein of unknown function DUF2344; KEGG: dhd:Dhaf_4340 radical sam protein, putative.
 
     0.839
ADB48177.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM family protein.
       0.817
ADB48175.1
Ribonuclease, Rne/Rng family; KEGG: pth:PTH_0829 ribonucleases G and E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.
       0.813
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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