STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdCBiotin/lipoyl attachment domain-containing protein; Biotin carrier subunit of the primary sodium pump glutaconyl- CoA decarboxylase (GCD). (145 aa)    
Predicted Functional Partners:
gcdB
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD); Belongs to the GcdB/MmdB/OadB family.
 
 
 0.993
ADB47859.1
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
 
 
 0.982
gcdD
Sodium pump decarboxylase, gamma subunit; Part of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). Possible membrane anchor for the alpha subunit.
    
 0.971
ADB47722.1
PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: tex:Teth514_1582 oxaloacetate decarboxylase.
    0.965
gcdA
Carboxyl transferase; Decarboxylase subunit of the primary sodium pump glutaconyl- CoA decarboxylase (GCD).
 
 
 0.948
ADB46948.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: drm:Dred_1781 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.907
ADB47834.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.907
ADB47836.1
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase.
     
 0.901
ADB48191.1
PFAM: carboxyl transferase; KEGG: tte:TTE1220 acetyl-CoA carboxylase alpha subunit.
 
  
 0.819
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 
 0.786
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.