STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdDSodium pump decarboxylase, gamma subunit; Part of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). Possible membrane anchor for the alpha subunit. (107 aa)    
Predicted Functional Partners:
gcdC
Biotin/lipoyl attachment domain-containing protein; Biotin carrier subunit of the primary sodium pump glutaconyl- CoA decarboxylase (GCD).
    
 0.971
gcdB
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD); Belongs to the GcdB/MmdB/OadB family.
    
  0.949
gcdA
Carboxyl transferase; Decarboxylase subunit of the primary sodium pump glutaconyl- CoA decarboxylase (GCD).
    
 0.946
ADB47859.1
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
    
  0.903
ADB46948.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: drm:Dred_1781 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
  0.900
ADB47834.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
  0.900
ADB47836.1
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase.
     
  0.900
ADB48191.1
PFAM: carboxyl transferase; KEGG: tte:TTE1220 acetyl-CoA carboxylase alpha subunit.
       0.638
ADB48192.1
Succinate CoA transferase; KEGG: aoe:Clos_0435 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase.
       0.424
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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