STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB48340.1PFAM: Na+/solute symporter; KEGG: dde:Dde_1268 putative sodium:solute symport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (491 aa)    
Predicted Functional Partners:
ADB48339.1
N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase domain protein; amidohydrolase; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase.
 
     0.836
ADB48338.1
TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cce:Ccel_2593 endoribonuclease L-PSP.
  
    0.744
ADB48341.1
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase.
 
     0.688
ADB48342.1
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dhd:Dhaf_2963 diaminopropionate ammonia-lyase.
 
    0.589
ADB48343.1
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_0258 sigma-54 dependent trancsriptional regulator.
 
     0.454
ADB48337.1
KEGG: gka:GK1970 hypothetical protein.
       0.442
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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