Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB48343.1Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_0258 sigma-54 dependent trancsriptional regulator. (596 aa)    
Predicted Functional Partners:
ADB48406.1
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: hmo:HM1_1310 RNA polymerase sigma-54 factor.
 
   
 0.813
ADB48342.1
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dhd:Dhaf_2963 diaminopropionate ammonia-lyase.
 
     0.606
ADB48193.1
PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tex:Teth514_2145 Fe-S cluster domain- containing protein.
 
      0.581
ADB48341.1
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase.
 
     0.576
ADB48344.1
PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3312 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.501
ADB47781.1
PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pth:PTH_1797 hypothetical protein.
  
     0.468
ADB48245.1
PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dhd:Dhaf_0813 hydrogenase large subunit domain protein.
 
      0.466
ADB48340.1
PFAM: Na+/solute symporter; KEGG: dde:Dde_1268 putative sodium:solute symport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.454
ADB48339.1
N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase domain protein; amidohydrolase; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase.
 
     0.410
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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