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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB48362.1TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit. (432 aa)    
Predicted Functional Partners:
ADB48361.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: csa:Csal_1073 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.920
ADB48360.1
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: csa:Csal_2976 TRAP dicarboxylate transporter, DctP subunit.
  
 0.914
ADB48330.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: asu:Asuc_0367 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.810
ADB46699.1
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ere:EUBREC_2837 hypothetical protein.
  
 0.806
ADB48363.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_2739 mandelate racemase/muconate lactonizing protein.
 
     0.796
ADB46697.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bha:BH2672 C4-dicarboxylate transport system (permease small protein).
 
 
 0.793
ADB48359.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: amt:Amet_0553 GntR family transcriptional regulator.
  
    0.407
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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