Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB48378.1PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; NADP oxidoreductase coenzyme F420- dependent; KEGG: bcl:ABC3757 hypothetical protein. (296 aa)    
Predicted Functional Partners:
ADB48376.1
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpc:RPC_2726 dimethylmenaquinone methyltransferase.
 
    0.719
ADB48326.1
PFAM: amidohydrolase 2; KEGG: mno:Mnod_8318 amidohydrolase 2.
 
     0.616
ADB48325.1
PFAM: protein of unknown function DUF453; KEGG: efe:EFER_3666 hypothetical protein.
 
    0.601
ADB47023.1
PFAM: protein of unknown function DUF453; KEGG: bay:RBAM_031870 YraM.
 
    0.584
ADB48372.1
KEGG: cma:Cmaq_1396 hypothetical protein.
 
     0.550
ADB48379.1
TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: amt:Amet_4275 D-3-phosphoglycerate dehydrogenase.
       0.436
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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