Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADB48403.1KEGG: ldb:Ldb0217 hypothetical protein. (103 aa)    
Predicted Functional Partners:
ADB46836.1
KEGG: sca:Sca_2326 hypothetical protein.
  
     0.625
ADB48404.1
PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: kol:Kole_0490 ATPase.
       0.515
ADB47412.1
KEGG: amt:Amet_2923 hypothetical protein.
  
     0.502
ADB46683.1
KEGG: sto:ST1078 hypothetical protein.
  
     0.499
ADB46786.1
PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; YadA domain protein; S-layer domain protein; KEGG: pmu:PM0714 Hsf.
  
     0.495
ADB47799.1
KEGG: fps:FP0848 hypothetical protein.
  
     0.482
ADB48050.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: hypothetical protein.
  
     0.464
ADB48018.1
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: hypothetical protein.
  
     0.463
ADB47255.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: ccu:Ccur_09790 cupin domain-containing protein.
  
     0.461
ADB46651.1
KEGG: bbe:BBR47_47820 hypothetical protein.
  
     0.460
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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