Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl40ePFAM: Ribosomal protein L40e; KEGG: Ubiquitin/ribosomal protein CEP52; Belongs to the eukaryotic ribosomal protein eL40 family. (53 aa)    
Predicted Functional Partners:
rpl32e
PFAM: Ribosomal protein L32e; KEGG: 60S ribosomal protein L32; K02912 large subunit ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
   
 0.998
rps24e
PFAM: Ribosomal protein S24e; KEGG: similar to ribosomal protein S24e; K02974 small subunit ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.998
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
  
 0.998
rpl18e
PFAM: ribosomal protein L15; KEGG: hypothetical protein; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.998
rpl21e
PFAM: Ribosomal protein L21e; KEGG: hypothetical protein; K02889 large subunit ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
   
 0.997
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
   
 0.997
rpl31e
KEGG: Ribosomal protein L31B; K02910 large subunit ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
   
 0.997
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.997
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.997
rps4e
KEGG: RPS4; ribosomal protein S4, component of cytosolic 80S ribosome and 40S small subunit; K02987 small subunit ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.997
Your Current Organism:
Staphylothermus hellenicus
NCBI taxonomy Id: 591019
Other names: S. hellenicus DSM 12710, Staphylothermus hellenicus BK20S6-10-b1, Staphylothermus hellenicus DSM 12710, Staphylothermus hellenicus P8, Staphylothermus hellenicus str. DSM 12710, Staphylothermus hellenicus strain DSM 12710, Staphylothermus sp. P8
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