STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSTIGRFAM: lysyl-tRNA synthetase; KEGG: noc:Noc_1618 lysine--tRNA ligase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family. (541 aa)    
Predicted Functional Partners:
ADI31832.1
Hypothetical protein.
       0.773
ADI31831.1
PFAM: extracellular solute-binding protein family 1; KEGG: dze:Dd1591_4126 extracellular solute-binding protein family 1.
 
     0.614
spt5
NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
    0.587
ADI31366.1
KEGG: dol:Dole_2980 signal transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.
  
     0.461
ADI31830.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b02180 putative permease component of ABC transporter.
 
     0.447
ADI31590.1
PFAM: extracellular solute-binding protein family 5; KEGG: kpu:KP1_5245 periplasmic dipeptide transport protein precursor.
  
     0.416
rpl18e
PFAM: ribosomal protein L15; KEGG: hypothetical protein; Belongs to the eukaryotic ribosomal protein eL18 family.
  
    0.409
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
   
  
 0.401
Your Current Organism:
Staphylothermus hellenicus
NCBI taxonomy Id: 591019
Other names: S. hellenicus DSM 12710, Staphylothermus hellenicus BK20S6-10-b1, Staphylothermus hellenicus DSM 12710, Staphylothermus hellenicus P8, Staphylothermus hellenicus str. DSM 12710, Staphylothermus hellenicus strain DSM 12710, Staphylothermus sp. P8
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