Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpl34ePFAM: Ribosomal protein L34e; KEGG: similar to putative ribosomal protein L34; K02915 large subunit ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family. (92 aa)    
Predicted Functional Partners:
rpl14e
KEGG: hypothetical protein; K02875 large subunit ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family.
 
 0.999
rpl18
Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
 
 0.997
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 0.997
rpl15
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
 
 0.996
rpl32e
PFAM: Ribosomal protein L32e; KEGG: 60S ribosomal protein L32; K02912 large subunit ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.996
rpl5
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
 
 0.996
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
 
 0.996
rpl14
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 0.996
rpl29
Ribosomal protein L29; KEGG: dat:HRM2_36180 RpmC; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 0.996
rpl30e
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: 60S ribosomal protein L30; K02908 large subunit ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 0.996
Your Current Organism:
Staphylothermus hellenicus
NCBI taxonomy Id: 591019
Other names: S. hellenicus DSM 12710, Staphylothermus hellenicus BK20S6-10-b1, Staphylothermus hellenicus DSM 12710, Staphylothermus hellenicus P8, Staphylothermus hellenicus str. DSM 12710, Staphylothermus hellenicus strain DSM 12710, Staphylothermus sp. P8
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