Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADI31161.1 | ADI32123.1 | Shell_0008 | Shell_1018 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Hypothetical protein. | 0.811 |
ADI31161.1 | ADI32297.1 | Shell_0008 | Shell_1197 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG: hypothetical protein. | 0.796 |
ADI31161.1 | ADI32453.1 | Shell_0008 | Shell_1364 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: NMD3 family protein. | 0.787 |
ADI31161.1 | ADI32619.1 | Shell_0008 | Shell_1531 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | KEGG: nucleolar GTP-binding protein 1; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding-1 domain protein. | 0.966 |
ADI31161.1 | ADI32694.1 | Shell_0008 | Shell_1607 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Brix domain protein; Probably involved in the biogenesis of the ribosome. | 0.805 |
ADI31161.1 | eif6 | Shell_0008 | Shell_1389 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.847 |
ADI31161.1 | rpl10 | Shell_0008 | Shell_1381 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.869 |
ADI31161.1 | rpl3 | Shell_0008 | Shell_1447 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
ADI31161.1 | rpl30 | Shell_0008 | Shell_1423 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | KEGG: 60S RIBOSOMAL PROTEIN L7; K02937 large subunit ribosomal protein L7e; TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30. | 0.934 |
ADI31161.1 | rps8e | Shell_0008 | Shell_1206 | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | KEGG: 40S ribosomal protein S8; K02995 small subunit ribosomal protein S8e; TIGRFAM: ribosomal protein S8e; PFAM: Ribosomal protein S8E. | 0.919 |
ADI32123.1 | ADI31161.1 | Shell_1018 | Shell_0008 | Hypothetical protein. | PFAM: GTP-binding protein HSR1-related; KEGG: nucleolar GTPase; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.811 |
ADI32123.1 | ADI32297.1 | Shell_1018 | Shell_1197 | Hypothetical protein. | PFAM: Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG: hypothetical protein. | 0.887 |
ADI32123.1 | ADI32453.1 | Shell_1018 | Shell_1364 | Hypothetical protein. | PFAM: NMD3 family protein. | 0.595 |
ADI32123.1 | ADI32619.1 | Shell_1018 | Shell_1531 | Hypothetical protein. | KEGG: nucleolar GTP-binding protein 1; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding-1 domain protein. | 0.956 |
ADI32123.1 | ADI32694.1 | Shell_1018 | Shell_1607 | Hypothetical protein. | Brix domain protein; Probably involved in the biogenesis of the ribosome. | 0.953 |
ADI32123.1 | eif6 | Shell_1018 | Shell_1389 | Hypothetical protein. | Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.847 |
ADI32123.1 | rpl10 | Shell_1018 | Shell_1381 | Hypothetical protein. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.944 |
ADI32123.1 | rpl3 | Shell_1018 | Shell_1447 | Hypothetical protein. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.771 |
ADI32123.1 | rpl30 | Shell_1018 | Shell_1423 | Hypothetical protein. | KEGG: 60S RIBOSOMAL PROTEIN L7; K02937 large subunit ribosomal protein L7e; TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30. | 0.866 |
ADI32123.1 | rps8e | Shell_1018 | Shell_1206 | Hypothetical protein. | KEGG: 40S ribosomal protein S8; K02995 small subunit ribosomal protein S8e; TIGRFAM: ribosomal protein S8e; PFAM: Ribosomal protein S8E. | 0.923 |
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