STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidAGlucose-inhibited division protein A. (630 aa)    
Predicted Functional Partners:
trmE
tRNA modification GTPase TrmE.
 
 0.995
gidB
Glucose-inhibited division protein B.
 
  
 0.976
mnmC
5-methylaminomethyl-2-thiouridine methyltransferase.
   
 
 0.802
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
 
 0.800
EEV24651.1
COG0345 Pyrroline-5-carboxylate reductase.
    
  0.766
rplF
50S ribosomal protein L6.
   
 
  0.765
EEV24890.1
COG0594 RNase P protein component.
  
  
 0.651
EEV24232.1
Oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
   
 
 0.540
oxaA
Inner membrane protein OxaA.
  
  
 0.531
topA
DNA topoisomerase I.
  
  
 0.461
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.