STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapD2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 3' end; 5' end is gene AM202_0134 on contig Contig_78. (107 aa)    
Predicted Functional Partners:
EEV24335.1
COG0289 Dihydrodipicolinate reductase.
  
 
 0.793
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein.
   
  
 0.763
AM202_0688
Probable aminotransferase.
  
 
 0.705
EEV24778.1
COG4992 Ornithine/acetylornithine aminotransferase.
    
 0.693
EEV24379.1
COG1932 Phosphoserine aminotransferase.
   
 
 0.674
AM202_0436
Putative DNA-binding protein.
  
 
  0.641
EEV24820.1
Adenosylmethionine--8-amino-7-oxononanoate transaminase; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase.
   
 
  0.625
bioB
Biotin synthase.
       0.605
thrA
Bifunctional aspartokinase/homoserine dehydrogenase.
 
  
 0.582
dapE
Succinyl-diaminopimelate desuccinylase.
 
 
 0.574
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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