STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacBRibonuclease R. (779 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH.
   
 0.995
rnd
Ribonuclease D.
   
 0.971
EEV24794.1
COG1278 Cold shock proteins.
    
 0.870
EEV24422.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
   
 
 0.838
EEV24237.1
Dinucleoside polyphosphate hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
   
 0.808
ntpA
COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
   
 0.774
EEV24722.1
Putative arginine/ornithine antiporter protein; COG0531 Amino acid transporters.
    
 0.729
EEV25288.1
Putative arginine/ornithine antiporter; COG0531 Amino acid transporters.
    
 0.729
ppnK
Inorganic polyphosphate/ATP-NAD kinase; COG0061 Predicted sugar kinase.
   
 
  0.727
ksgA
COG0030 Dimethyladenosine transferase (rRNA methylation).
 
 0.725
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.