Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AM202_0187 | fbpC-2 | AM202_0187 | AM202_05309 | Hemin import ATP-binding protein; 3' end; 5' end is gene AM202_0187 on contig Contig_14. | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | 0.414 |
AM202_0187 | hugX | AM202_0187 | AM202_0188 | Hemin import ATP-binding protein; 3' end; 5' end is gene AM202_0187 on contig Contig_14. | Heme utilization protein. | 0.738 |
AM202_0187 | hugZ | AM202_0187 | AM202_0189 | Hemin import ATP-binding protein; 3' end; 5' end is gene AM202_0187 on contig Contig_14. | Heme utilization protein. | 0.723 |
AM202_107 | hugX | AM202_107 | AM202_0188 | Hypothetical protein. | Heme utilization protein. | 0.424 |
EEV25389.1 | hugX | AM202_04177 | AM202_0188 | COG4635 Flavodoxin. | Heme utilization protein. | 0.524 |
fbpC | fur | AM202_02125 | AM202_0327 | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | Ferric uptake regulation protein. | 0.613 |
fbpC | hugX | AM202_02125 | AM202_0188 | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | Heme utilization protein. | 0.613 |
fbpC-2 | AM202_0187 | AM202_05309 | AM202_0187 | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | Hemin import ATP-binding protein; 3' end; 5' end is gene AM202_0187 on contig Contig_14. | 0.414 |
fbpC-2 | fur | AM202_05309 | AM202_0327 | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | Ferric uptake regulation protein. | 0.613 |
fbpC-2 | hugX | AM202_05309 | AM202_0188 | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | Heme utilization protein. | 0.613 |
fur | fbpC | AM202_0327 | AM202_02125 | Ferric uptake regulation protein. | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | 0.613 |
fur | fbpC-2 | AM202_0327 | AM202_05309 | Ferric uptake regulation protein. | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | 0.613 |
fur | hugX | AM202_0327 | AM202_0188 | Ferric uptake regulation protein. | Heme utilization protein. | 0.613 |
hugX | AM202_0187 | AM202_0188 | AM202_0187 | Heme utilization protein. | Hemin import ATP-binding protein; 3' end; 5' end is gene AM202_0187 on contig Contig_14. | 0.738 |
hugX | AM202_107 | AM202_0188 | AM202_107 | Heme utilization protein. | Hypothetical protein. | 0.424 |
hugX | EEV25389.1 | AM202_0188 | AM202_04177 | Heme utilization protein. | COG4635 Flavodoxin. | 0.524 |
hugX | fbpC | AM202_0188 | AM202_02125 | Heme utilization protein. | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | 0.613 |
hugX | fbpC-2 | AM202_0188 | AM202_05309 | Heme utilization protein. | Ferric transporter ATP-binding subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. | 0.613 |
hugX | fur | AM202_0188 | AM202_0327 | Heme utilization protein. | Ferric uptake regulation protein. | 0.613 |
hugX | hugZ | AM202_0188 | AM202_0189 | Heme utilization protein. | Heme utilization protein. | 0.953 |
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