STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmJCOG0257 Ribosomal protein L36. (41 aa)    
Predicted Functional Partners:
rpmE2
COG0254 Ribosomal protein L31.
 
 
 0.969
rpsN
30S ribosomal protein S14.
  
 
 0.953
EEV25306.1
Elongation factor Tu; COG0050 GTPases - translation elongation factors.
  
 0.948
rpmD
50S ribosomal protein L30.
  
 
 0.948
rpmF
COG0333 Ribosomal protein L32.
  
 
 0.947
rpsS
30S ribosomal protein S19.
  
 
 0.947
rpsH
30S ribosomal protein S8.
  
 
 0.947
rplL
50S ribosomal protein L7/L12.
  
 
 0.946
rpsL
COG0048 Ribosomal protein S12.
  
 
 0.946
EEV25304.1
COG0049 Ribosomal protein S7.
  
 
 0.946
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.