STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truDtRNA pseudouridine synthase D. (338 aa)    
Predicted Functional Partners:
surE
5'-nucleotidase surE.
 
  
 0.942
rplQ
50S ribosomal protein L17.
   
   0.837
truB
tRNA pseudouridine synthase B; 3' end; 5' end is gene AM202_0673 on contig Contig_92.
   
 
 0.837
dnaJ
Chaperone protein dnaJ.
   
   0.835
rplU
COG0261 Ribosomal protein L21.
  
   0.833
trmE
tRNA modification GTPase TrmE.
   
   0.833
EEV24848.1
Hypothetical protein; COG0799 Uncharacterized homolog of plant Iojap protein.
    
   0.832
EEV24975.1
COG0236 Acyl carrier protein.
    
   0.832
engB
Putative GTP-binding protein EngB.
    
   0.832
AM202_0523
Predicted rRNA methyltransferase.
  
   0.831
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.