STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoHRNA polymerase sigma-32 factor. (321 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha.
  
 0.949
rpoB
DNA-directed RNA polymerase subunit beta.
 
 0.933
rpoC
DNA-directed RNA polymerase subunit beta'.
 
 0.910
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
 
 
 0.890
nusA
Transcription elongation protein NusA.
  
 
 0.810
dnaJ
Chaperone protein dnaJ.
  
 
 0.791
groEL
60 kDa chaperonin.
   
 
 0.772
dnaG
DNA primase.
 
  
 0.709
fur
Ferric uptake regulation protein.
  
 
 0.659
EEV24619.1
COG1734 DnaK suppressor protein.
  
 
 0.625
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.