STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSCOG0013 Alanyl-tRNA synthetase. (874 aa)    
Predicted Functional Partners:
AM202_0809
Hypothetical protein.
   
 0.939
AM202_0310
Tetratricopeptide repeat (TPR) family protein.
   
 0.937
EEV24350.1
Hypothetical protein; COG0457 FOG: TPR repeat.
   
 0.937
EEV24806.1
Hypothetical protein; COG5655 Plasmid rolling circle replication initiator protein and truncated derivatives.
   
 0.921
EEV24807.1
COG5655 Plasmid rolling circle replication initiator protein and truncated derivatives.
   
 0.921
EEV24277.1
Hypothetical protein.
   
 0.921
pheT
phenylalanyl-tRNA synthetase beta chain.
 
 
 0.869
recA
Recombinase A.
 
 
 0.861
leuS
COG0495 Leucyl-tRNA synthetase.
 
 
 0.819
fabG
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  0.814
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.