STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluERibosomal large subunit pseudouridine synthase E. (224 aa)    
Predicted Functional Partners:
nudC
NADH pyrophosphatase.
       0.773
AM202_0332
Hypothetical protein.
       0.773
AM202_0333
Hypothetical protein.
       0.773
EEV24391.1
COG0283 Cytidylate kinase.
 
  
 0.718
rlmL
Putative N6-adenine-specific DNA methylase.
  
 
 0.658
engA
GTP-binding protein EngA; COG1160 Predicted GTPases.
 
  
 0.627
EEV25320.1
COG0708 Exonuclease III.
  
    0.610
rluD
23S rRNA pseudouridine synthase D.
 
 
 0.583
sirA
Sulfurtransferase.
       0.551
ACI28448.1
LexA regulated protein.
       0.497
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.