STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmAtRNA (uracil-5-)-methyltransferase. (369 aa)    
Predicted Functional Partners:
AM202_0085
Hypothetical protein.
  
     0.571
cbiO
Predicted ABC transport ATP-binding protein CbiO.
       0.490
luxS
S-ribosylhomocysteine lyase.
  
     0.476
sixA
Possible phosphohistidine phosphatase.
  
     0.475
EEV25324.1
COG0301 Thiamine biosynthesis ATP pyrophosphatase.
  
   
 0.465
utp
Urea transport protein ApUT.
       0.459
EEV25405.1
COG3101 Uncharacterized protein conserved in bacteria.
  
     0.459
ACE87880.1
Hypothetical protein.
   
    0.422
zipA
Cell division ZipA-like protein.
 
     0.404
rlmL
Putative N6-adenine-specific DNA methylase.
  
  
 0.401
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.