STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmC16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. (328 aa)    
Predicted Functional Partners:
yhbZ
Hypothetical GTP-binding protein.
   
    0.575
EEV25275.1
COG3050 DNA polymerase III, psi subunit.
  
    0.560
bioB
Biotin synthase.
    
  0.558
AM202_0575
Putative DNA uptake protein.
  
   
 0.527
sixA
Possible phosphohistidine phosphatase.
  
     0.464
rlmL
Putative N6-adenine-specific DNA methylase.
   
  
 0.433
rplA
50S ribosomal protein L1.
  
    0.428
trmD
tRNA (guanine-N(1)-)-methyltransferase.
  
  
 0.428
rpoB
DNA-directed RNA polymerase subunit beta.
  
    0.417
rsmB
Trk system potassium uptake protein TrkA.
  
  
 0.404
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.