STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hldDADP-L-glycero-D-manno-heptose-6-epimerase. (308 aa)    
Predicted Functional Partners:
rpsC
30S ribosomal protein S3.
   
 0.987
rpsQ
30S ribosomal protein S17.
   
  0.986
rpsH
30S ribosomal protein S8.
   
  0.986
rpsL
COG0048 Ribosomal protein S12.
   
 0.984
rpsS
30S ribosomal protein S19.
   
  0.984
metK
S-adenosylmethionine synthetase.
   
 0.984
rpsN
30S ribosomal protein S14.
   
  0.984
rpsE
30S ribosomal protein S5.
   
  0.984
rplD
50S ribosomal protein L4.
   
  0.983
rpsB
30S ribosomal protein S2.
   
  0.981
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.