EEV25320.1 protein (Actinobacillus minor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EEV25320.1

COG0708 Exonuclease III. (267 aa)

Predicted Functional Partners:

EEV24599.1

0.999

EEV24734.1

0.999

EEV24200.1

0.992

EEV24522.1

0.950

nfo

0.932

EEV24477.1

0.920

ung

0.852

hfq

0.840

birA

0.826

EEV25138.1

0.777

Your Current Organism:

Actinobacillus minor

NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEV24200.1	EEV24477.1	AM202_04547	AM202_05956	COG0177 Predicted EndoIII-related endonuclease.	COG1194 A/G-specific DNA glycosylase.	0.700
EEV24200.1	EEV24599.1	AM202_04547	AM202_00195	COG0177 Predicted EndoIII-related endonuclease.	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	0.646
EEV24200.1	EEV25320.1	AM202_04547	AM202_03830	COG0177 Predicted EndoIII-related endonuclease.	COG0708 Exonuclease III.	0.992
EEV24200.1	nfo	AM202_04547	AM202_0801	COG0177 Predicted EndoIII-related endonuclease.	Endonuclease IV.	0.746
EEV24200.1	ung	AM202_04547	AM202_0805	COG0177 Predicted EndoIII-related endonuclease.	uracil-DNA glycosylase.	0.841
EEV24477.1	EEV24200.1	AM202_05956	AM202_04547	COG1194 A/G-specific DNA glycosylase.	COG0177 Predicted EndoIII-related endonuclease.	0.700
EEV24477.1	EEV24522.1	AM202_05956	AM202_06185	COG1194 A/G-specific DNA glycosylase.	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	0.654
EEV24477.1	EEV24599.1	AM202_05956	AM202_00195	COG1194 A/G-specific DNA glycosylase.	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	0.482
EEV24477.1	EEV25320.1	AM202_05956	AM202_03830	COG1194 A/G-specific DNA glycosylase.	COG0708 Exonuclease III.	0.920
EEV24477.1	birA	AM202_05956	AM202_0179	COG1194 A/G-specific DNA glycosylase.	Bifunctional biotin operon repressor/biotin synthetase BirA.	0.437
EEV24522.1	EEV24477.1	AM202_06185	AM202_05956	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	COG1194 A/G-specific DNA glycosylase.	0.654
EEV24522.1	EEV24599.1	AM202_06185	AM202_00195	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	0.999
EEV24522.1	EEV24734.1	AM202_06185	AM202_00880	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	DNA ligase; COG1793 ATP-dependent DNA ligase.	0.994
EEV24522.1	EEV25138.1	AM202_06185	AM202_02910	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.	0.997
EEV24522.1	EEV25320.1	AM202_06185	AM202_03830	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	COG0708 Exonuclease III.	0.950
EEV24522.1	ung	AM202_06185	AM202_0805	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	uracil-DNA glycosylase.	0.710
EEV24599.1	EEV24200.1	AM202_00195	AM202_04547	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	COG0177 Predicted EndoIII-related endonuclease.	0.646
EEV24599.1	EEV24477.1	AM202_00195	AM202_05956	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	COG1194 A/G-specific DNA glycosylase.	0.482
EEV24599.1	EEV24522.1	AM202_00195	AM202_06185	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).	0.999
EEV24599.1	EEV24734.1	AM202_00195	AM202_00880	DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).	DNA ligase; COG1793 ATP-dependent DNA ligase.	0.975