STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmtCOG0223 Methionyl-tRNA formyltransferase. (316 aa)    
Predicted Functional Partners:
rsmB
Trk system potassium uptake protein TrkA.
 
 
 0.965
def
Peptide deformylase.
 0.930
EEV24270.1
Bifunctional protein FolD; COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase.
 
 
 0.845
EEV24318.1
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain.
     
 0.805
metG
COG0143 Methionyl-tRNA synthetase.
   
 
 0.796
EEV25098.1
COG0631 Serine/threonine protein phosphatase.
  
   0.779
EEV25418.1
COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA.
       0.773
thyA
Thymidylate synthase.
  
 
 0.760
EEV24998.1
S-layer protein.
    
 0.741
metH
COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
    
 0.711
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.