Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEV25130.1 | EEV25447.1 | AM202_02870 | AM202_04467 | Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; COG0134 Indole-3-glycerol phosphate synthase. | COG0616 Periplasmic serine proteases (ClpP class). | 0.405 |
EEV25130.1 | topA | AM202_02870 | AM202_0073 | Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; COG0134 Indole-3-glycerol phosphate synthase. | DNA topoisomerase I. | 0.515 |
EEV25447.1 | EEV25130.1 | AM202_04467 | AM202_02870 | COG0616 Periplasmic serine proteases (ClpP class). | Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; COG0134 Indole-3-glycerol phosphate synthase. | 0.405 |
EEV25447.1 | ppnK | AM202_04467 | AM202_00760 | COG0616 Periplasmic serine proteases (ClpP class). | Inorganic polyphosphate/ATP-NAD kinase; COG0061 Predicted sugar kinase. | 0.535 |
EEV25447.1 | topA | AM202_04467 | AM202_0073 | COG0616 Periplasmic serine proteases (ClpP class). | DNA topoisomerase I. | 0.453 |
ppnK | EEV25447.1 | AM202_00760 | AM202_04467 | Inorganic polyphosphate/ATP-NAD kinase; COG0061 Predicted sugar kinase. | COG0616 Periplasmic serine proteases (ClpP class). | 0.535 |
topA | EEV25130.1 | AM202_0073 | AM202_02870 | DNA topoisomerase I. | Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; COG0134 Indole-3-glycerol phosphate synthase. | 0.515 |
topA | EEV25447.1 | AM202_0073 | AM202_04467 | DNA topoisomerase I. | COG0616 Periplasmic serine proteases (ClpP class). | 0.453 |