STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfAlong-chain-fatty-acid--CoA ligase. (561 aa)    
Predicted Functional Partners:
EEV24289.1
Putative fatty acid oxidation complex alpha subunit; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.961
rplF
50S ribosomal protein L6.
    
  0.943
EEV24975.1
COG0236 Acyl carrier protein.
  
 0.920
EEV25024.1
COG0671 Membrane-associated phospholipid phosphatase.
    
 0.872
rplM
COG0102 Ribosomal protein L13.
    
 
 0.815
rplC
50S ribosomal protein L3.
   
   0.814
rplO
50S ribosomal protein L15.
    
   0.814
rplX
50S ribosomal protein L24.
    
   0.813
rplB
50S ribosomal protein L2.
   
 
 0.812
EEV24198.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
   
 
 0.808
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.