STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV24362.1AAA family ATPase, CDC48 subfamily protein; COG0464 ATPases of the AAA+ class. (545 aa)    
Predicted Functional Partners:
EEV25268.1
COG0024 Methionine aminopeptidase.
   
 0.843
rplJ
50S ribosomal protein L10.
   
  0.842
glpK
COG0554 Glycerol kinase.
   
  0.832
rplW
50S ribosomal protein L23.
    
  0.820
rpmD
50S ribosomal protein L30.
   
  0.815
rrmJ
Ribosomal RNA large subunit methyltransferase J.
  
  0.808
AM202_0281
Hypothetical protein.
    
  0.803
EEV25235.1
Hypothetical protein.
    
  0.803
EEV25348.1
Hypothetical protein.
    
  0.803
rsmB
Trk system potassium uptake protein TrkA.
  
  0.802
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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