STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV24424.1Cold-shock DEAD box protein A-like protein; COG0513 Superfamily II DNA and RNA helicases. (604 aa)    
Predicted Functional Partners:
rsmB
Trk system potassium uptake protein TrkA.
 
 0.921
rplD
50S ribosomal protein L4.
   
 0.920
rplJ
50S ribosomal protein L10.
   
 0.910
EEV24198.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
  
 0.903
rpsC
30S ribosomal protein S3.
   
 0.897
rrmJ
Ribosomal RNA large subunit methyltransferase J.
   
 0.896
hrpA
ATP-dependent RNA helicase HrpA.
   
 0.895
EEV24422.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
  
 0.892
rpmD
50S ribosomal protein L30.
   
 0.891
rplW
50S ribosomal protein L23.
   
 0.889
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.