STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV24453.1DNA-binding protein HU; COG0776 Bacterial nucleoid DNA-binding protein. (90 aa)    
Predicted Functional Partners:
dnaB
Replicative DNA helicase.
  
 
 0.740
dnaG
DNA primase.
    
 0.706
ihfA
Integration host factor, alpha chain.
  
0.691
priA
Primosomal protein N'.
    
  0.690
dnaA
COG0593 ATPase involved in DNA replication initiation.
    
 0.689
kefBC
Glutathione-regulated potassium-efflux system protein.
    
 
 0.548
EEV24454.1
COG3068 Uncharacterized protein conserved in bacteria.
       0.527
EEV24881.1
COG1518 Uncharacterized protein predicted to be involved in DNA repair.
    
   0.503
rpsT
30S ribosomal protein S20.
  
  
 0.457
nusA
Transcription elongation protein NusA.
  
 
   0.447
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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