STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluD23S rRNA pseudouridine synthase D. (325 aa)    
Predicted Functional Partners:
yhbZ
Hypothetical GTP-binding protein.
 
 
 
 0.854
EEV24342.1
COG3028 Uncharacterized protein conserved in bacteria.
    
   0.800
EEV25279.1
23S rRNA (guanosine-2'-O-)-methyltransferase; COG0566 rRNA methylases.
 
   0.745
trmE
tRNA modification GTPase TrmE.
 
 
 0.735
rplU
COG0261 Ribosomal protein L21.
 
   0.728
rplR
50S ribosomal protein L18.
  
 
   0.713
rplC
50S ribosomal protein L3.
  
 
   0.711
rplT
COG0292 Ribosomal protein L20.
  
   0.703
EEV24848.1
Hypothetical protein; COG0799 Uncharacterized homolog of plant Iojap protein.
  
   0.693
rplQ
50S ribosomal protein L17.
   
   0.688
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.