STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
leuSCOG0495 Leucyl-tRNA synthetase. (862 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase I.
   
 
 0.999
metG
COG0143 Methionyl-tRNA synthetase.
  
0.996
gltX
COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
  
 0.979
ileS
COG0060 Isoleucyl-tRNA synthetase.
 
0.976
EEV24329.1
COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
   
 0.966
argS
arginyl-tRNA synthetase.
 
 0.960
syp
prolyl-tRNA synthetase; 3' end; 5' end is gene AM202_0433 on contig Contig_138.
 
 0.956
lysS
lysyl-tRNA synthase.
   
 0.955
asnS
asparaginyl-tRNA synthetase.
  
 0.952
pheT
phenylalanyl-tRNA synthetase beta chain.
  
  
 0.947
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.