STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recFRecombination protein F; COG1195 Recombinational DNA repair ATPase (RecF pathway). (361 aa)    
Predicted Functional Partners:
EEV24522.1
COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).
 
  
 0.862
dnaA
COG0593 ATPase involved in DNA replication initiation.
 
  
 0.851
recR
COG0353 Recombinational DNA repair protein (RecF pathway).
 
 
 0.841
recO
COG1381 Recombinational DNA repair protein (RecF pathway).
    
 0.783
EEV24520.1
COG2020 Putative protein-S-isoprenylcysteine methyltransferase.
       0.723
EEV24556.1
COG0593 ATPase involved in DNA replication initiation.
 
  
 0.659
parE
DNA topoisomerase IV subunit B.
  
  
 0.504
EEV24308.1
DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
  
  
 0.504
EEV24599.1
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
     
 0.500
ruvA
COG0632 Holliday junction resolvasome, DNA-binding subunit.
  
  
 0.485
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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