STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srp54Signal recognition particle protein (sigma-54 like protein); 5' end; 3' end is gene AM202_0633 on contig Contig_53. (362 aa)    
Predicted Functional Partners:
ftsY
Cell division protein FtsY-like protein.
 
0.979
rplW
50S ribosomal protein L23.
   
 0.933
rplD
50S ribosomal protein L4.
  
 0.921
rplX
50S ribosomal protein L24.
   
 0.921
rpmC
50S ribosomal protein L29.
   
 
 0.917
rpsE
30S ribosomal protein S5.
  
 
 0.917
rplC
50S ribosomal protein L3.
   
 
 0.912
rplV
50S ribosomal protein L22.
   
 
 0.910
rplB
50S ribosomal protein L2.
   
 
 0.906
rplM
COG0102 Ribosomal protein L13.
  
 
 0.905
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.