STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysADiaminopimelate decarboxylase. (416 aa)    
Predicted Functional Partners:
EEV24384.1
Aspartate kinase III; COG0527 Aspartokinases.
  
 0.970
EEV24335.1
COG0289 Dihydrodipicolinate reductase.
 
 
 0.911
thrA
Bifunctional aspartokinase/homoserine dehydrogenase.
 
 
 0.843
EEV24492.1
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
  
 0.829
dapF
COG0253 Diaminopimelate epimerase.
 
 0.799
AM202_0688
Probable aminotransferase.
  
 
 0.796
EEV24778.1
COG4992 Ornithine/acetylornithine aminotransferase.
 
 
 0.728
EEV24788.1
COG0165 Argininosuccinate lyase.
 
 
 0.726
argG
Argininosuccinate synthase.
  
 
 0.707
murF
UDP-MurNAc-pentapeptide synthetase.
    
 0.677
Your Current Organism:
Actinobacillus minor
NCBI taxonomy Id: 591023
Other names: A. minor 202, Actinobacillus minor 202, Actinobacillus minor str. 202, Actinobacillus minor strain 202
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