Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK98480.1ABC transporter integral membrane protein. (245 aa)    
Predicted Functional Partners:
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.831
EFK98479.1
Conserved hypothetical protein.
       0.773
EFK98481.1
Nodulation ABC transporter NodI.
 
     0.709
EFL02728.1
Integral membrane protein.
  
 
  0.688
EFL01415.1
ABC transporter membrane protein.
 
 
  0.638
EFL01927.1
ABC transporter membrane protein.
  
  0.620
EFK99895.1
ABC transporter ATP-binding protein.
  
  0.587
EFL00508.1
Cobalt ABC transporter, permease CbiQ.
  
  
  0.584
EFK98603.1
ABC-2 type transporter.
  
 
  0.551
EFK99630.1
Metal transport ABC transporter.
    
  0.550
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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