Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFK98481.1Nodulation ABC transporter NodI. (309 aa)    
Predicted Functional Partners:
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.831
EFK98480.1
ABC transporter integral membrane protein.
 
     0.709
EFK98799.1
Choline ABC transporter, ATP-binding protein.
 
   
 
0.654
EFL00825.1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
  0.613
EFL02728.1
Integral membrane protein.
  
 
  0.601
EFK99064.1
Type I secretion system ATPase.
  
 
  0.596
EFL02738.1
Phosphonate C-P lyase system protein PhnK.
  
  
 
0.590
EFK98483.1
Two-component system response regulator.
       0.558
EFL04062.1
Lipoprotein releasing system, ATP-binding protein.
  
  
 
0.558
EFK98482.1
Two-component system sensor kinase.
       0.556
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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