Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK98487.1Conserved hypothetical protein. (178 aa)    
Predicted Functional Partners:
EFK98436.1
Conserved hypothetical protein.
  
 
   0.569
EFL00199.1
Conserved hypothetical protein.
 
 
   0.552
EFK99322.1
Methyltransferase.
  
 
   0.537
EFL03357.1
Methyltransferase type 11.
   
   0.479
EFK99143.1
Methyltransferase.
    
   0.476
EFK99251.1
Methyltransferase; Unextendable partial coding region.
    
   0.476
EFK99482.1
DNA-binding protein.
    
   0.476
EFL00309.1
Methyltransferase.
    
   0.476
EFL00708.1
Methyltransferase.
    
   0.476
EFL00851.1
Methyltransferase.
    
   0.476
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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