Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK98541.1Peptide-binding transporter. (599 aa)    
Predicted Functional Partners:
EFK98540.1
Nickel ABC transporter, permease subunit NikB.
 
 0.962
EFK98284.1
Peptide/opine/nickel uptake family ABC transporter.
  
 0.911
EFK99445.1
D-methionine ABC transporter, ATP-binding protein; Unextendable partial coding region.
   
  0.887
EFK98539.1
Nickel ABC transporter, permease subunit NikC.
 
  0.883
EFL02499.1
ABC transporter solute-binding protein.
  
  
  0.878
EFL04071.1
Secreted solute-binding protein.
  
  
  0.878
EFK98798.1
Glycine betaine ABC transport system permease.
     
  0.852
EFK98932.1
Ectoine/hydroxyectoine ABC transporter, permease EhuC.
     
  0.852
EFK98978.1
Phosphonate C-P lyase system protein PhnK.
     
  0.852
EFK99085.1
ABC transporter permease.
     
  0.852
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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