Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK98801.1Siderophore-interacting protein. (284 aa)    
Predicted Functional Partners:
EFK98800.1
5'-3' exonuclease.
       0.816
EFK98802.1
Ribosomal pseudouridine synthase.
       0.705
EFK98799.1
Choline ABC transporter, ATP-binding protein.
       0.676
EFL00079.1
Type II beta-Tyr adenylation domain-containing protein.
  
  
 0.654
EFK98798.1
Glycine betaine ABC transport system permease.
       0.631
EFL03850.1
Transcriptional regulator.
  
    0.554
EFK98797.1
Regulatory protein.
       0.530
EFL00822.1
Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.467
EFL01866.1
Periplasmic binding protein.
 
 
 0.426
EFL03983.1
Predicted protein.
  
    0.414
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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