Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK98806.1RarB protein. (133 aa)    
Predicted Functional Partners:
EFK98804.1
RarD.
 
   0.988
EFK98805.1
RarC protein.
 
   
 0.980
EFK98807.1
Integral membrane protein.
 
     0.951
EFK98597.1
ATP/GTP-binding protein.
 
 
 0.918
EFL02620.1
ATP/GTP-binding protein.
 
 
 0.918
EFL02811.1
ATP/GTP-binding protein.
 
 
 0.918
EFL02815.1
ATP/GTP-binding protein.
 
 
 0.918
EFL03710.1
ATP/GTP-binding protein.
 
 
 0.918
EFL03844.1
CvhD.
 
 
 0.912
EFK98037.1
RarD.
 
   0.910
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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