STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK98834.1Lipoprotein oligopeptide binding protein. (534 aa)    
Predicted Functional Partners:
EFK98284.1
Peptide/opine/nickel uptake family ABC transporter.
 
 0.762
EFK98123.1
ABC transporter solute binding lipoprotein.
  
  
 
0.732
EFL03683.1
Hypothetical protein; FRNA.
  
  
 
0.719
EFL03730.1
Nickel ABC transporter, permease subunit NikB.
 
  0.714
EFL02438.1
Nickel ABC transporter, permease subunit NikB.
 
  0.705
EFL02433.1
Nickel ABC transporter, permease subunit NikB.
 
  0.704
EFL03684.1
Nickel ABC transporter, permease subunit NikB.
 
  0.704
EFK98122.1
Nickel ABC transporter, permease subunit NikB.
 
  0.697
EFL03301.1
Extracellular solute-binding protein.
  
  
  0.693
EFL03954.1
Nickel ABC transporter, permease subunit NikB.
 
  0.692
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.