Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFK98874.1Gluconate permease. (466 aa)    
Predicted Functional Partners:
EFK98873.1
Shikimate kinase.
 
  
 0.948
EFK98872.1
Transcriptional regulator.
 
   
 0.864
EFL03529.1
Transferase; Belongs to the glycerate kinase type-1 family.
 
  
 0.595
EFL02343.1
D-amino acid deaminase.
  
    0.554
EFL02344.1
Carbohydrate kinase.
  
  
 0.549
EFL01229.1
6-phosphogluconate dehydrogenase (decarboxylating).
 
  
 0.535
EFL02342.1
D-aminoacylase.
       0.530
EFL02345.1
IclR-family transcriptional regulator.
       0.530
EFL02346.1
Pyrimidine utilization protein C.
       0.530
EFL02965.1
Two-component system sensor kinase.
     
 0.469
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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