Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFK98876.1Integral membrane protein. (301 aa)    
Predicted Functional Partners:
EFL00079.1
Type II beta-Tyr adenylation domain-containing protein.
   
 
 0.673
EFL02517.1
ATP-dependent DNA helicase PcrA.
    
   0.658
EFK98581.1
Mannose-1-phosphate guanyltransferase.
 
 0.652
EFL03290.1
Malto-oligosyltrehalose trehalohydrolase.
   
 0.632
EFK98877.1
Predicted protein.
       0.615
EFL00822.1
Amino acid adenylation; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.608
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.604
EFK99024.1
Conserved hypothetical protein.
  
  
  0.598
EFK99068.1
Conserved hypothetical protein.
  
  
  0.573
EFL02373.1
Conserved hypothetical protein.
  
     0.572
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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