Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99223.1Conserved hypothetical protein. (958 aa)    
Predicted Functional Partners:
EFL00065.1
MerR-family transcriptional regulator.
  
     0.606
EFL03085.1
YD repeat-containing protein.
  
     0.542
EFL03084.1
Serine/threonine protein kinase.
  
     0.520
EFK99961.1
Conserved hypothetical protein.
  
     0.517
EFL00633.1
Conserved hypothetical protein.
  
     0.481
EFK99625.1
Secreted glycosyl hydrolase.
  
     0.478
EFL01805.1
Nucleotide-binding protein.
  
     0.470
EFL00410.1
Transcriptional regulator.
  
     0.453
EFK98202.1
Mycodextranase.
  
     0.435
EFL00001.1
Secreted protein.
  
     0.420
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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