Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99296.1Transcriptional regulator. (93 aa)    
Predicted Functional Partners:
EFK99295.1
Conserved hypothetical protein.
       0.758
EFK99294.1
Conserved hypothetical protein.
       0.726
EFK99293.1
NLP/P60-family protein.
       0.637
EFK98726.1
Precorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
  0.605
EFL01956.1
Oxidoreductase.
    
  0.554
EFL03049.1
acyl-CoA synthetase.
 
  
  0.537
EFK98451.1
Transcriptional regulatory protein.
  
   
 0.507
EFL03050.1
acyl-CoA synthetase.
 
  
  0.463
EFL01715.1
Conserved hypothetical protein.
  
     0.453
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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