Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFK99392.1Membrane protein. (522 aa)    
Predicted Functional Partners:
EFK99394.1
Extracellular solute binding protein.
 
  
 0.975
EFL04194.1
Lipoprotein.
  
     0.656
EFK99389.1
Heme oxygenase.
 
  
 0.652
EFL00116.1
Regulatory protein.
  
     0.649
EFK99393.1
Conserved hypothetical protein.
 
    
0.626
EFK99395.1
Iron ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.601
EFL00674.1
Conserved hypothetical protein; Unextendable partial coding region.
  
     0.597
EFK99798.1
Conserved hypothetical protein; Unextendable partial coding region.
  
    0.564
EFL04043.1
Hypothetical protein.
  
     0.564
hmuV
Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
    0.543
Your Current Organism:
Streptomyces sp. SPB78
NCBI taxonomy Id: 591157
Other names: S. sp. SPB78
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